Help needed to package manta which needs samtools >= 1.2 and libbam.a
Hi folks,
I have injected manta[1] into packaging Git. Upstream contains several
projects as tar.bz2 which are packaged for Debian and rebuilds these in
the packaging process. I tried to tweak the cmake input files to
reference the Debian packaged alternatives. I was stumbling about
samtools (manta upstream contains version 1.2 - we just have 1.3 which
might be a source of failure due to incompatibilities but lets ignore
this for the moment). The cmake build system needs a libbam.a which is
only build by the legacy libbam-dev 0.1.19. I wonder how we can get
a libbam.a from recent samtools - or is there any other solution to
build manta?
Here is the error message the current builds ends with:
...
make[3]: *** No rule to make target '/libhts.a', needed by 'src/c++/lib/applications/GenerateSVCandidates/test/manta_unit_test_GenerateSVCandidates'. Stop.
make[3]: Leaving directory '/build/manta-1.0.2+dfsg/obj-x86_64-linux-gnu'
CMakeFiles/Makefile2:1831: recipe for target 'src/c++/lib/applications/GenerateSVCandidates/test/CMakeFiles/manta_unit_test_GenerateSVCandidates.dir/all' failed
...
Kind regards
Andreas.
[1] https://anonscm.debian.org/git/debian-med/manta.git
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