Tracer in beast-mcmc (Was: Bug#810842: [anbe@debian.org: Bug#810842: igv: libsam-java is gone])
Hi Olivier,
On Mon, Jan 18, 2016 at 09:57:21AM +0000, olivier sallou wrote:
> > > > I made a try and beast tracer jar seems to build correcly.
> > >
> > > Could you commit the change for this?
> > >
> > I made no modification. Reactivating test in d/rules was fine for me
>
> > But there is no according JAR for tracer. How can I call this
> > functionality. Could you suggest a working wrapper script?
To my limited knowledge looking at the Java source code this would be
a wrapper script that fires up the tracer application in beast-mcmc
package:
#!/bin/sh
BEAST_LIB="/usr/share/beast-mcmc"
java -Xms64m -Xmx1024m -Djava.library.path="$BEAST_LIB" -cp "$BEAST_LIB/beast.jar" dr.app.tracer.application.TracerApp $*
However, when unpackaging /usr/share/beast-mcmc/beast.jar and look into
the dir where this class should reside I see no classes at all:
$ ls -l dr/app/tracer/application/
drwxr-sr-x 2 tillea admin 4096 Jul 18 2015 images
> there is no target to build a specific jar. When tracer is build , it
> compiles Java files to .class in build dir. Tracer classes are included in
> beast.jar
At least not in the current Debian package or am I missing something?
Kind regards
Andreas.
--
http://fam-tille.de
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