Re: htsjdk
I updated (locally) ngs-sdk to create Java bindings and get it created.
I tried to use it with htsjdk for validation, but most of tests fail
(though maybe not related to the Java lib itself).
It ran 22704 tests, but 229 tests fail. It gonna be hard to debug....
Olivier
On 01/04/2016 02:57 PM, Andreas Tille wrote:
> Hi Olivier,
>
> thanks for working on this package.
>
> On Mon, Jan 04, 2016 at 02:42:25PM +0100, Olivier Sallou wrote:
>> I almost have something, but while I tried to execute provided tests, it
>> appeared that library expects a "backend" (a .so file), as per specified
>> in doc description:
>>
>> ".... The engine for accessing SRA data is contained within the sister
>> repository ncbi-vdb."
>>
>> while this backend is not mandatory as library supports multiple
>> backend, I think it might be necessary to package this one to get htsjdk
>> fully functional.
> Just state here if you need any help with this.
>
> Kind regards
>
> Andreas.
>
--
Olivier Sallou
IRISA / University of Rennes 1
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