Re: [MoM] deepnano getting info from maintainer
Hi Çağrı,
any news?
Kind regards
Andreas.
On Fri, Dec 02, 2016 at 12:47:23AM +0300, Çağrı ULAŞ wrote:
> Hi Andreas,
>
> I already started to make poretools-data package. Had to make some
> practice on split packaging . It's almost done. When I finished
> I will upload them both.
>
> Regards.
>
> 2016-12-01 16:00 GMT+03:00 Andreas Tille <andreas@an3as.eu>:
>
> > Hi Çağrı,
> >
> > I wonder whether Afif's hint how to get the example files might have
> > been helpful for you. I admit I'm not keen to stick to the monthly
> > boundaries of the MoM projects but if deepnano should make it into
> > stretch we need to hurry up a bit.
> >
> > Kind regards
> >
> > Andreas.
> >
> > On Wed, Nov 16, 2016 at 11:50:43AM +0200, Çağrı ULAŞ wrote:
> > > Hi Andreas,
> > >
> > > I finally find fast5 files from poretools which is an utility for
> > > converting fast5 to fasta/fastq file. There are fast5 examples on
> > > poretools' github page. Is there any thing we need to specify for this
> > data
> > > in debian directory?
> > >
> > > Regards
> > >
> > > 2016-11-12 1:01 GMT+03:00 Andreas Tille <andreas@an3as.eu>:
> > >
> > > > Hi,
> > > >
> > > > On Fri, Nov 11, 2016 at 08:34:15PM +0200, Çağrı ULAŞ wrote:
> > > > > Working on autopkgtest but I have issues with deepnano. There are no
> > man
> > > > > pages or example files I found.
> > > >
> > > > Did you tried -h/--help options that might be used with help2man?
> > > >
> > > > > Only bitbucket page have a basic usage but
> > > > > this is more different from classic alignment tools.
> > > >
> > > > If there is no chance with help2man you might try to find some simple
> > > > introduction how to write manpages (or check out a simple manpage on
> > the
> > > > Debian system) and feed in the content of the bitbucket page.
> > > >
> > > > > I try to run with some
> > > > > .npz datas in nets_data directory. But give me an error 'Unable to
> > open
> > > > > file (File signature not found)'. Anyway, .npz datas are numpy's
> > > > > uncompressed files according to scipy's docs. 'OMP_NUM_THREADS=1
> > > > > deepnano_basecall' command uses fast5 files. Cant get any fast5 file.
> > > > Where
> > > > > can I get them, any ideas?
> > > >
> > > > * Asking upstream
> > > > * Asking Canberk how he found example files
> > > > * Hoping for hints of other readers here
> > > >
> > > > Sorry, I can not help myself since I'm not working as bioinformatican.
> > > >
> > > > > Nowadays, lots of work on me at university but I'll try to
> > communicate
> > > > more
> > > > > often.
> > > >
> > > > OK.
> > > >
> > > > Kind regards
> > > >
> > > > Andreas.
> > > >
> > > > --
> > > > http://fam-tille.de
> > > >
> > > >
> > >
> > >
> > > --
> > > *Çağrı ULAŞ*
> > > about.me/cagriulas
> >
> > --
> > http://fam-tille.de
> >
> >
>
>
> --
> *Çağrı ULAŞ*
> about.me/cagriulas
--
http://fam-tille.de
Reply to: