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Re: Macsyfinder Test Issues

Hi again,

On Thu, Oct 27, 2016 at 09:16:06AM +0200, Andreas Tille wrote:
> On Thu, Oct 27, 2016 at 03:53:59AM +0300, Canberk Koç wrote:
> > I try to make a test for macsyfinder but when i try quick start guide like:
> > 
> > macsyfinder --db-type unordered --sequence-db metagenome.fasta all
> > 
> > it gives an error message like:
> > 
> > ValueError: debian/macsyfinder/usr/share/macsyfinder/DEF: No such
> > definition directory
> > 
> > I control theres is a DEF directory in /usr/share i think developer gave
> > path wrong.
> > Is anybody came across something like that or this program have a bug ?
> I admit that I wonder how these currently 25 regular users (according to
> popcon) did not stumbled upon this.  You definitely hit a bug in the
> packaging.  You should report this via
>      reportbug macsyfinder
> The cause is that in
>    /usr/lib/python2.7/dist-packages/macsypy/config.py
> the temporary location that is used for packaging ended up hardcoded as
>    debian/macsyfinder/usr/
> I'll check how to fix this but a bug report seems apropriate here.

I found a *hack* to solve the issue.  It would be better to fix setup.py
to provide a root dir there.  You might like to ask on
debian-python@lists.debian.org list if you want to solve the issue
properly but have no idea how to do this.
> BTW, I'll also convert the packaging from SVN to Git as you prefer.

That's done now.  The fix (=hack) is in


Kind regards



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