2016-08-09 9:38 GMT+03:00 Andreas Tille <andreas@fam-tille.de>:
Hi Canberk,
On Tue, Aug 09, 2016 at 07:46:26AM +0300, Canberk Koç wrote:
> I make a little test for Emboss.
> I found there is a test directory in this package but tests are not
> complete i think ,
> make check did not do anything useful so they will add tests to the
> package i assume .
OK, having at least some partial test is better than no test at all.
Where the hints for ncbi-tools6 by Aaron and me helpful?
> Another issue GSoC send me an email again and final evaluation is on 15
> august for students so i'll send them commits how is our progress you think
> ?
I admit I would have hoped that we would manage more packages at the end
but the second half went better than the first. It would be great if
you could keep on adding tests even after GSoC has finished and we might
manage to get tests for most of the Debian Med packages until Freeze for
Debian 9 (about end of the year).
> I have a question also how can i find which packages i committed with a
> script what should i use ?
You could query the public UDD mirror via
PGPASSWORD="public-udd-mirror" psql --host=public-udd-mirror.xvm.mit.edu --username=public-udd-mirror udd
The following query is an example how to get those packages featuring
you as changelog owner and adding the Vcs URL in Git.
udd=> SELECT DISTINCT u.source, u.version, s.vcs_url FROM upload_history u JOIN sources s ON u.source = s.source WHERE changed_by_email = 'canberkkoc@gmail.com' and s.release='sid' and s.vcs_url not like 'svn%' order by u.source ;
source | version | vcs_url
-------------+-------------------+-------------------------- ------------------------------ -----------------
amap-align | 2.2-6 | https://anonscm.debian.org/git/debian-med/amap-align.git
bwa | 0.7.15-2 | https://anonscm.debian.org/git/debian-med/bwa.git
clustalo | 1.2.2-1 | https://anonscm.debian.org/git/debian-med/clustalo.git
clustalw | 2.1+lgpl-5 | https://anonscm.debian.org/git/debian-med/clustalw.git
dialign | 2.2.1-8 | https://anonscm.debian.org/git/debian-med/dialign.git
exonerate | 2.4.0-2 | https://anonscm.debian.org/git/debian-med/exonerate.git
fastqc | 0.11.5+dfsg-3 | https://anonscm.debian.org/git/debian-med/fastqc.git
gdpc | 2.2.5-6 | https://anonscm.debian.org/git/debian-med/gdpc.git
hmmer | 3.1b2+dfsg-1 | https://anonscm.debian.org/git/debian-med/hmmer.git
hmmer2 | 2.3.2-10 | https://anonscm.debian.org/git/debian-med/hmmer2.git
htslib | 1.3.1-2 | https://anonscm.debian.org/git/debian-med/htslib.git
infernal | 1.1.1-5 | https://anonscm.debian.org/git/debian-med/infernal.git
kalign | 1:2.03+20110620-3 | https://anonscm.debian.org/git/debian-med/kalign.git
mummer | 3.23+dfsg-1 | https://anonscm.debian.org/git/debian-med/mummer.git
muscle | 1:3.8.31+dfsg-2 | https://anonscm.debian.org/git/debian-med/muscle.git
ncbi-blast+ | 2.3.0-2 | https://anonscm.debian.org/git/debian-med/ncbi-blast+.git
phylip | 1:3.696+dfsg-3 | https://anonscm.debian.org/git/debian-med/phylip.git
primer3 | 2.3.7-2 | https://anonscm.debian.org/git/debian-med/primer3.git
probcons | 1.12-11 | https://anonscm.debian.org/git/debian-med/probcons.git
t-coffee | 11.00.8cbe486-4 | https://anonscm.debian.org/git/debian-med/t-coffee.git
vcftools | 0.1.14+dfsg-3 | https://anonscm.debian.org/git/debian-med/vcftools.git
(21 Zeilen)
> Thanks for your help and support.
You are welcome.
Updated todo list:
ncbi-tools6
njplot (according to manual there is an option without X11,
-> https://anonscm.debian.org/git/debian-med/njplot.git
picard-tools
cd-hit
tigr-glimmer
Kind regards
Andreas.
--
http://fam-tille.de