Re: New version of ncbi-blast+ available
----- Mail original -----
> De: "Andreas Tille" <andreas@an3as.eu>
> À: "Debian Med Project List" <debian-med@lists.debian.org>, "Olivier Sallou" <osallou@debian.org>, "Aaron M. Ucko"
> <ucko@debian.org>
> Envoyé: Mardi 2 Août 2016 11:43:13
> Objet: New version of ncbi-blast+ available
>
> Hi Aaron and Olivier,
>
> there is a new version of ncbi-blast+ available. I wonder whether you
> might be able to upgrade the package in the next couple of days.
I gonna have a look, but this is really a build modification, I may need Aaron help, there build system is really complex.
Olivier
If
> yes, I'd delay the upload of the old version which now has autopkgtest
> (I did not yet verified its functionality). I imported the new upstream
> version and tried to apply and update the patches. Either I did
> something wrong or there is again a change in the build system. My
> attempt ended up in:
>
> ...
> PROJECTS:
> enabled: cgi serial objects app algo
> disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench
>
> Tools / flags / paths: /build/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.mk
> Configuration header:
> /build/ncbi-blast+-2.4.0/c++/BUILD/inc/ncbiconf_unix.h
>
> To build everything: cd /build/ncbi-blast+-2.4.0/c++/BUILD/build &&
> /usr/bin/make all_r
> or simply run /usr/bin/make in the current directory
>
>
> ******* CONFIGURATION SUCCESSFUL *******
> make[1]: Leaving directory '/build/ncbi-blast+-2.4.0'
> debian/rules override_dh_auto_build-arch
> make[1]: Entering directory '/build/ncbi-blast+-2.4.0'
> cd c++/BUILD/build && \
> make -j1 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/
> objtools/align_format/ objtools/blast/"
> make[2]: Entering directory '/build/ncbi-blast+-2.4.0/c++/BUILD/build'
> make[2]: Makefile.flat: No such file or directory
> make[2]: *** No rule to make target 'Makefile.flat'. Stop.
> make[2]: Leaving directory '/build/ncbi-blast+-2.4.0/c++/BUILD/build'
>
>
> I would have upgraded the package but for some reason also this as my
> previous attempts to contribute to this package was not successfull.
>
> Kind regards
>
> Andreas.
>
> --
> http://fam-tille.de
>
>
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