2016-07-25 10:12 GMT+03:00 Canberk Koç <canberkkoc@gmail.com>:
Hello Andreas,Sascha,Thanks for your help first of all. I can't look what you've changed in mummer but i'll look it by tommorrow and i will give you more detailed report. I am going on list also ;-)Best Regards
2016-07-25 10:07 GMT+03:00 Andreas Tille <andreas@an3as.eu>:Hi Canberk,
On Sun, Jul 24, 2016 at 08:13:16AM +0200, Andreas Tille wrote:
> > I commit Gdpc to Git here is the problem unit test codes(all of em) from
> > Readme file and gives segmentation fault for this issue.
>
> I think this is a severe bug in the package. Would you please use
>
> reportbug
>
> to report the issue. Do you feel able to track down the issue? May be
> some debugging of the source code will shade some light.
I think this is solved by Sascha's patch and I uploaded the package
without an actual autopkgtest but leaving your script for manual testing
for the users.
> > Second issue Mummer features mummerplot and run-mummer1 has some faults
> > mummerplots have a lot of faulty lines i can't manage to solve them
> > run-mummer1 also have some problem about tail command neither i can't
> > manage to solve it. But i command line these tests and take pass result.
>
> Hmmmm, I fixed the line that is uncompressing the data files and now the
> test script seems to pass. What exactly do you think is wrong?
Could you please explain what exactly is wrong with the mummer test
after I fixed the compression of the test data? I'd recommend to always
use the `find ...` command since it safely unpacks all gzipped files.
> gdpc
Uploaded.
> mummer (I'll convert this to Git as well)
Please explain more verbosely what might be wrong.
Further todo suggestions:
fastqc
kalign
> I'll convert kalign to Git.
Done
probcons