Bug#828189: marked as done (ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis)
Your message dated Mon, 27 Jun 2016 08:02:14 +0000
with message-id <E1bHRUk-0001dG-5V@franck.debian.org>
and subject line Bug#828189: fixed in r-bioc-dnacopy 1.46.0-1
has caused the Debian Bug report #828189,
regarding ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
828189: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=828189
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>
* Package name : r-bioc-dnacopy
Version : 1.46.0
Upstream Author : Venkatraman E. Seshan <seshanv@mskcc.org>
* URL : http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html
* License : GPL-2.0+
Programming Lang: R
Description : R package: DNA copy number data analysis
Implements the circular binary segmentation (CBS) algorithm to segment DNA
copy number data and identify genomic regions with abnormal copy number.
.
This package is for analyzing array DNA copy number data, which is usually
(but not always) called array Comparative Genomic Hybridization (array CGH)
data It implements a methodology for finding change-points in these data which
are points after which the (log) test over reference ratios have changed
location. This model is that the change-points correspond to positions where
the underlying DNA copy number has changed. Therefore, change-points can be
used to identify regions of gained and lost copy number. We also provide a
function for making relevant plots of these data.
This is a dependency for r-cran-pscbs and will be team maintained by the Debian Med team
--- End Message ---
--- Begin Message ---
Source: r-bioc-dnacopy
Source-Version: 1.46.0-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-dnacopy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 828189@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.crusoe@gmail.com> (supplier of updated r-bioc-dnacopy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 25 Jun 2016 13:58:30 -0700
Source: r-bioc-dnacopy
Binary: r-bioc-dnacopy
Architecture: source amd64
Version: 1.46.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
r-bioc-dnacopy - R package: DNA copy number data analysis
Closes: 828189
Changes:
r-bioc-dnacopy (1.46.0-1) unstable; urgency=medium
.
* Initial release. (Closes: #828189)
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