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Bug#828189: ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis



Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>

* Package name    : r-bioc-dnacopy
  Version         : 1.46.0
  Upstream Author : Venkatraman E. Seshan <seshanv@mskcc.org>
* URL             : http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html
* License         : GPL-2.0+
  Programming Lang: R
  Description     : R package: DNA copy number data analysis

 Implements the circular binary segmentation (CBS) algorithm to segment DNA
 copy number data and identify genomic regions with abnormal copy number.
 .
 This package is for analyzing array DNA copy number data, which is usually
 (but not always) called array Comparative Genomic Hybridization (array CGH)
 data It implements a methodology for finding change-points in these data which
 are points after which the (log) test over reference ratios have changed
 location. This model is that the change-points correspond to positions where
 the underlying DNA copy number has changed. Therefore, change-points can be
 used to identify regions of gained and lost copy number. We also provide a
 function for making relevant plots of these data.

This is a dependency for r-cran-pscbs and will be team maintained by the Debian Med team


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