Fwd: [Debian-med-packaging] Bug#823673: samtools: FTBFS in testing

[Olivier Sallou <olivier.sallou@irisa.fr>]

Hi Charles,
seems that we have cross bugs/mails with samtools.

Has samtools been updated accordingly to match  libhts >= 1.3.1 ? I understand that yes from previous emails, but is described bug linked to the otherbug?


Thanks

Olivier

----- Mail transféré -----
> De: "Santiago Vila" <sanvila@unex.es>
> À: "Debian BTS" <submit@bugs.debian.org>
> Envoyé: Samedi 7 Mai 2016 15:03:45
> Objet: [Debian-med-packaging] Bug#823673: samtools: FTBFS in testing
> 
> Package: samtools
> Version: 1.3.1-1
> Severity: serious
> 
> Dear maintainer:
> 
> This package currently fails to build from source in stretch.
> 
> ------------------------------------------------------------
> === Testing mpileup.reg regressions ===
> 
> UNEXPECTED FAIL: Output mismatch for $samtools mpileup -x -d 8500 -B -f
> mpileup.ref.fa deep.sam|awk '{print $4}'
> See FAIL-47.out.1 vs expected/47.out
> ------------------------------------------------------------
> 
> The full build log is attached.
> 
> I see that this package required a change recently for htslib 1.3.1.
> However, if this only builds now with libhts >= 1.3.1, then the
> Build-Depends field should be updated accordingly.
> 
> Thanks.
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> Debian-med-packaging@lists.alioth.debian.org
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