Re: Lets maintain libbpp-phyl-omics in Debian Med team
Hi Julien,
On Sat, Apr 09, 2016 at 12:19:07AM +0200, Andreas Tille wrote:
>
> I've started with libbpp-core[1] which is now conform to Debian Med
> policy and fixes two open bugs. I have not yet closed "FTBFS with GCC
> 6: cannot convert x to y" [2]. It would be great if you as upstream
> could have a look and make sure it will at least be fixed in the next
> release (or tell me if it is fixed even in the current release).
>
> I'll continue with the other packages in this manner.
I continued with libbpp-seq[3] but this build shows a problem when
running the test suite:
dh_auto_test
make -j1 test ARGS\+=-j1
make[1]: Verzeichnis „/home/andreas/debian-maintain/alioth/debian-med_git/build-area/libbpp-seq-2.2.0/obj-x86_64-linux-gnu“ wird betreten
Running tests...
/usr/bin/ctest --force-new-ctest-process -j1
Test project /home/andreas/debian-maintain/alioth/debian-med_git/build-area/libbpp-seq-2.2.0/obj-x86_64-linux-gnu
Start 1: test_alphabets
1/7 Test #1: test_alphabets ................... Passed 0.01 sec
Start 2: test_sequences
2/7 Test #2: test_sequences ................... Passed 0.01 sec
Start 3: test_io
3/7 Test #3: test_io ..........................***Exception: Other 0.01 sec
terminate called after throwing an instance of 'bpp::IOException'
what(): Fasta::appendFromStream: can't read from istream input
Start 4: test_containers
4/7 Test #4: test_containers .................. Passed 0.01 sec
Start 5: test_alignment_scores
5/7 Test #5: test_alignment_scores ............ Passed 0.01 sec
Start 6: test_walker
6/7 Test #6: test_walker ...................... Passed 0.02 sec
Start 7: test_bowker
7/7 Test #7: test_bowker ...................... Passed 76.56 sec
86% tests passed, 1 tests failed out of 7
Total Test time (real) = 76.62 sec
The following tests FAILED:
3 - test_io (OTHER_FAULT)
Errors while running CTest
Makefile:130: die Regel für Ziel „test“ scheiterte
make[1]: *** [test] Fehler 8
(Sorry for German locale).
Since libcpp-core needed to pass the new queue due to the name change
forced by the g++-5 transition you need to use your own libbpp-core-dev
package to reproduce this build which hopefully will express the same
problem. Could you please comment on this?
Kind regards
Andreas.
> [1] https://anonscm.debian.org/git/debian-med/libbpp-core.git
> [2] https://bugs.debian.org/811657
[3] https://anonscm.debian.org/git/debian-med/libbpp-seq.git
--
http://fam-tille.de
Reply to: