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RFS: augustus -- gene prediction in eukaryotic genomes



Hi all,

I have prepared a version of AUGUSTUS in git. It builds three binary packages:

 - augustus, with the main binaries
 - augustus-data, containing pre-built species parameters for the most common organisms,
 - augustus-doc, which contains documentation such as manual-style READMEs and HTML tutorials.

The package causes no ‘legitimate' Lintian errors or warnings, only two (overridden) warnings concerning timestamped tarballs in the packages, which however were already included by upstream. I have also added autopkgtests for example gene finding with and without hints, and for simple retraining + gene finding. The package also builds reproducibly on amd64.

I also wrote man pages for the included executables. Upstream also contributed two man pages for tools whose function was not immediately clear to me; they will in turn include all man pages in their tarball starting from the next release.

Could anyone probably take a look, please? I’d be happy to address any remaining issues.

Cheers,
Sascha

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