Now that libjung-free-java has been accepted I've updated the trinityrnaseq package
The tests again pass, this has been tested in a debci virtual machine.
All that is left is two spelling corrections and a mysterious hardening warning from Lintian.
Given that this package is quite complex I thought I'd ask for a wide review before I request an upload.
I will be doing a thorough file-by-file review & copyright audit as well.
Later I will package DESeq2 (I have the packaged locally but need to file ITPs & create the repos)
Cheers!