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Re: [Bio-linux-dev] Bringing the Artemis package officially into Debian



Hi Afif,

thanks again for your push on artemis packaging.

On Tue, Sep 22, 2015 at 08:51:59PM -0700, Afif Elghraoui wrote:
> Following the earlier email exchange, I had started some draft packaging
> for Artemis [1]. At a cursory look, it seems that all the Java
> dependencies are now available from Debian packages. That is, except for
> jemAlign.jar, which I can find no trace of anywhere on the internet
> other than Artemis's bundle and an email thread on Debian Med where
> Andreas is also looking for its source. The Artemis upstream repository
> at github shows that the jar file is about as old as git itself, so I'm
> curious if it is still even necessary (or even works with modern Java
> versions).

Sometimes you simply find out by droping a *.jar whether it is needed or
not (but upstream confirmation would be better for sure). :-)
 
> In any case, my draft package doesn't build right now, apparently
> because the classpath is not being read by javac.

I added jemboss as Build-Depends which reduced the number of "class not
found" errors.  I also added citation data.

> Did I mention I'm no Java enthusiast?

Did I mention that I'm in the same group?

> Anyone who wants to make changes to the packaging
> repository is more than welcome.

If we do not find help here we should ask on
debian-java@lists.debian.org.  I also have no idea.

Kind regards

       Andreas.

-- 
http://fam-tille.de


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