Re: Packging jModelTest for Debian and versioning
Hi Andreas,
As you said, jModelTest has been officially migrated to github, since
google code is going away:
https://github.com/ddarriba/jmodeltest
I tagged the last releases, available at Google Drive together with the
PhyML binaries. jModelTest requires PhyML to be available, but it can be
configured for using a system wide installed version by setting the flag
`global-phyml-exe` in the configuration file:
https://github.com/ddarriba/jmodeltest2/blob/v2.1.7r20150222/src/main/resources/conf/jmodeltest.conf
Don't hesitate on asking me if you have any question or you need me to do
any further change in the code.
Best Regards,
Diego.
On 27.08.2015 14:18, Andreas Tille wrote:
> Hi,
>
> I'm writing you on behalf of the Debian Med team that has the objective
> to package all free software that is relevant in the field of medicine
> and biology. You can find an overview about the biological software we
> have just packaged for Debian on our biology task page[1].
>
> Since I was asked to package jModelTest I checked what might be the
> latest version. At
>
> https://code.google.com/p/jmodeltest2/wiki/Updates
>
> I found
>
> "20 Feb 2015 Version 2.1.7 rev 20150220"
>
> which seems to be the latest download that is available at your Google
> drive download location. In addition at Github a release
> jModelTest-2.1.7-20141120 is available. While I would really prefer
> releases from Github since this simplifies things a lot this does not
> seem to be tha lastet release.
>
> It would help if you could confirm that the codebase officially moved
> from Google Code to Github and if so if all released states would be
> properly tagged.
>
> Kind regards
>
> Andreas.
>
> [1] http://blends.debian.org/med/tasks/bio
>
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