I already sent patch to upstream
Le sam. 22 août 2015 18:01, Michael Crusoe <michael.crusoe@gmail.com> a écrit :On Fri, Aug 21, 2015 at 11:05 PM olivier sallou <olivier.sallou@gmail.com> wrote:I had to patch trinity fot gcc5, did you test with this version? I have provided patch to upstream, and can give it to you if necessary
Yeah, I just ran into those problems. Feel free to send the patch to me or commit it directly. I'm sure upstream will appreciate them as well!
Le sam. 22 août 2015 02:57, Michael Crusoe <michael.crusoe@gmail.com> a écrit :Hello again Olivier,Thank you for asking for an update on the trinityrnaseq related packages:trinityrnaseq: waiting on libjung-free-java, rsem, express, and jaligner. Otherwise all the tests run successfully for me.libjung-free-java package: in NEW queue courtesy Olivier https://ftp-master.debian.org/new/libjung-free-java_2.0.1-1.htmlrsem: waiting for r-bioc-ebseq; needs manpages, patch descriptions, add new patches to add hardening flagsr-bioc-ebseq: ready for sponsoring now that r-cran-blockmodeling is in the archiveexpress: now renamed to `berkeley-express` as 'bio-express' and 'seq-express' have other significant Google hits. Needs a patch to add hardening flags.jaligner: in NEW queue: https://ftp-master.debian.org/new/jaligner_1.0-1.html===
Any and all assistance you and the group can provide for the above would be greatly appreciated!On Thu, Aug 20, 2015 at 11:32 PM olivier sallou <osallou@debian.org> wrote:Hi Michael,I was about to package trinityrnaseq when I found your ITP to package it.What is the status of the package?ThanksOlivier--Michael R. Crusoe: Programmer & Bioinformatician crusoe@ucdavis.edu
The lab for Data Intensive Biology; University of California, Davis
https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe--Michael R. Crusoe: Programmer & Bioinformatician crusoe@ucdavis.edu
The lab for Data Intensive Biology; University of California, Davis
https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe