I had to patch trinity fot gcc5, did you test with this version? I have provided patch to upstream, and can give it to you if necessary
Le sam. 22 août 2015 02:57, Michael Crusoe <michael.crusoe@gmail.com> a écrit :Hello again Olivier,Thank you for asking for an update on the trinityrnaseq related packages:trinityrnaseq: waiting on libjung-free-java, rsem, express, and jaligner. Otherwise all the tests run successfully for me.libjung-free-java package: in NEW queue courtesy Olivier https://ftp-master.debian.org/new/libjung-free-java_2.0.1-1.htmlrsem: waiting for r-bioc-ebseq; needs manpages, patch descriptions, add new patches to add hardening flagsr-bioc-ebseq: ready for sponsoring now that r-cran-blockmodeling is in the archiveexpress: now renamed to `berkeley-express` as 'bio-express' and 'seq-express' have other significant Google hits. Needs a patch to add hardening flags.jaligner: in NEW queue: https://ftp-master.debian.org/new/jaligner_1.0-1.html===
Any and all assistance you and the group can provide for the above would be greatly appreciated!On Thu, Aug 20, 2015 at 11:32 PM olivier sallou <osallou@debian.org> wrote:Hi Michael,I was about to package trinityrnaseq when I found your ITP to package it.What is the status of the package?ThanksOlivier--Michael R. Crusoe: Programmer & Bioinformatician crusoe@ucdavis.edu
The lab for Data Intensive Biology; University of California, Davis
https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe