Re: Help needed to update to latest fastqc

[Andreas Tille <andreas@an3as.eu>]

Hi Olivier,

any news about this hdf5lib packaging?

Kind regards

     Andreas.

On Tue, May 05, 2015 at 09:25:23AM +0200, Olivier Sallou wrote:
> 
> 
> On 05/04/2015 10:52 PM, Andreas Tille wrote:
> > Hi Olivier,
> >
> > On Mon, May 04, 2015 at 06:41:10PM +0200, Olivier Sallou wrote:
> >> File fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.java imports
> >> HDFS5Factory from ch.systemsx.cisd.hdf5
> >>
> >> but jhdf5.jar only contains files like:  ncsa/hdf/hdf5lib/... and no
> >> HDF5Factory
> >>
> >> this jhdf5 is not the correctl lib (or an other one is needed).
> > I guess its this one:
> >
> >     https://svncisd.ethz.ch/doc/hdf5/hdf5-8.10/ch/systemsx/cisd/hdf5/package-summary.html
> seems that original code source is the same
> (https://svncisd.ethz.ch/repos/cisd/jhdf5/trunk/source/java/)
> (/ncsa/...) but that /ch/...  has not been included for a reason
> >  
> >> In addition, in debian/patches/build.xml is missing commons-math3.jar to
> >> be added in pathelement for classpath.
> >>
> >> for duplicate classes, I don't yet, but hdf5 first need to be resolved.
> > If I do not hear from you I'll try the URL above tomorrow (if nobody
> > else might beat me which would for sure welcome as always).
> >
> > Kind regards
> >
> >       Andreas.
> >
> 
> -- 
> Olivier Sallou
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