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Re: Update on Trinityrnaseq packaging

On Thu, Feb 12, 2015 at 11:03:48PM +0000, Michael Crusoe wrote:
> > a cleaned up archive.  You can get this by
> >
> >     debian/rules get-orig-source
> >
> > ... or if you want to save your bandwidth via
> >
> >     mk-origtargz --repack --compress xz <path_to_original_download_source>
> >
> Yeah, I had tried that; I get this head-scratching response:
> mcrusoe@athyra:~/debian/trinityrnaseq$ mk-origtargz --repack --compress xz
> ../v2.0.3.tar.gz
> tar: trinityrnaseq-2.0.3/Butterfly/src/lib/jung-graph-impl-2.0.1.jar: Not
> found in archive
> tar: trinityrnaseq-2.0.3/Butterfly/src/lib/jung-api-2.0.1.jar: Not found in
> archive
> tar: trinityrnaseq-2.0.3/Butterfly/src/lib/jung-algorithms-2.0.1.jar: Not
> found in archive
> tar: trinityrnaseq-2.0.3/Butterfly/src/lib/java-getopt-1.0.13.jar: Not
> found in archive
> tar: trinityrnaseq-2.0.3/Butterfly/src/lib/collections-generic-4.01.jar:
> Not found in archive
> tar: trinityrnaseq-2.0.3/Butterfly/src/lib/Jaligner.jar: Not found in
> archive
> tar: trinityrnaseq-2.0.3/Butterfly/prev_vers/Butterfly_r2013_08_14.jar: Not
> found in archive
> tar: Exiting with failure status due to previous errors

I created trinityrnaseq_2.0.3+dfsg.orig.tar.xz from pristinetar and renamed
it to trinityrnaseq_2.0.3+dfsg__.orig.tar.xz.  Than I tried:

$ mk-origtargz ../trinityrnaseq_2.0.3+dfsg__.orig.tar.xz 
Successfully repacked ../trinityrnaseq_2.0.3+dfsg__.orig.tar.xz as ../trinityrnaseq_2.0.3+dfsg.orig.tar.xz, deleting 15 files from it.

which looks good ... at least when using some random older version of
devscripts which I had by chance installed on the box I used to try
(2.14.10).  After installing the current devscipts 2.15.1 I can
reproduce the problem above.  I remember that I needed to change some
Files-Excluded expressions recently for the very same reason.  I'll
track this down further and will come up with a solution later (today or

BTW, thanks for flooding our reporitory with more and more great
software.  That's a very appreciated effort and I really like this
effect after sprints.

Kind regards



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