Re: debian med packages in the ELIXIR registry
Hi Steffen,
On Thu, Feb 05, 2015 at 10:48:50AM +0100, "Steffen Möller" wrote:
> > I actually was considering to split up the (IMHO currently way to
> > large) med-bio into say:
> >
> > bio-alignment
> > bio-analysis
> > bio-annotation
> > bio-classification
> > ...
> > to match the "Operation" category of Edam[1] or also possibly
> >
> > bio-data-resources
> > bio-nucleic
> > bio-protein
> > bio-sequencing
> > bio-structure
> > bio-phylogenetics
> > ...
> >
> > the Edam topics[2] (since tasks and topics might be the best match).
>
> Very reasonable. I cannot tell which would be more appropiate.
I hope to find some time for coding Blends issue at DebCamp / DebConf.
Once I will be able to implement a plan (I think from now ten years ago)
to "resolve metapackages dependencies" on the tasks pages (which came a
lot closer at hand since last years sprint) I might come up with some
sensible implementation for a pure Debian Bio Blend containing those
fine grained Bio tasks while Debian Med simply stays with med-bio.
> > You might remember that I was seeking for a sensible split of the now
> > more than > 150 dependencies in med-bio for a long time and it might be
> > that Edam gives some good reason here.
>
> Liking it.
>
> The assignment for the blend metapackages is a static one, but would
> you fancy task pages that allow for two different views on the same
> packages - one for topics and (upon press of some magic button) the
> switch to an operation-based view?
This goes beyond the current technique and I have no idea how to
implement this for the moment.
> @Kristoffer,Jon,Hervé,Matus et al. - our website adopting your ontology
> based approach please consider to interpret as an early success for
> your dissemination work.
BTW, if we really establish the ontology specification for *all* our
packages - which is *work* I can not do since I'm simply lacking the
necessary knowledge - we could base our tasks design also on this data.
While this is looking far into the future I'd consider this a nice
application of the edam data for Debian Med.
Kind regards
Andreas.
--
http://fam-tille.de
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