Re: Need some help for Java package

[Andreas Tille <andreas@an3as.eu>]

Hi Olivier,

On Sat, Feb 08, 2014 at 09:11:15AM +0100, olivier.sallou@codeless.fr wrote:
> > I gonna test this.
> I've gone furher, remove cplex, but there is still an issue. Code
> references:
> 
> CigarParser.extractAllAlignDiffs()
> 
> 
> but there is no "import ...." in the code that would import CigarParser
> from a library or local code!
> and I cannot find on Internet any CigarParser class.
> 
> This is related in a way or an other to samtools, but I do not see any
> CigarParser in libsam-java.
> 
> I wonder how the source code is stable ....
> 
> Any way, does anyone has an idea where this CigarParser may come from?

Thanks for all your work.  I have phone connection to upstream so I will
be able to clarify this next week.  Your contribution up to this point
was very helpful.

Kind regards

         Andreas.

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