Re: Need some help for Java package
On 02/08/2014 08:42 AM, olivier.sallou@codeless.fr wrote:
> On 02/08/2014 12:16 AM, Andreas Tille wrote:
>> Hi,
>>
>> I need to package a Java package without build system. I prepared the
>> packaging at
>>
>> git://anonscm.debian.org/debian-med/giira.git
>>
>> and need to reconstruct the file GIIRA.jar which is part of
>>
>> http://sourceforge.net/projects/giira/files/GIIRA.zip
>>
>> Any idea how to create the jar file? (Feel free to commit straight to
>> Git.)
> I was close to get it, but I see it needs a cplex.jar coming from IBM
> Cplex, which is not free (in all ways).
> It seems it can work with GLPK with a command-line option (which would
> be the only available option in Debian), but this means removing all
> cplex references from code with patches.
>
>
> I gonna test this.
I've gone furher, remove cplex, but there is still an issue. Code
references:
CigarParser.extractAllAlignDiffs()
but there is no "import ...." in the code that would import CigarParser
from a library or local code!
and I cannot find on Internet any CigarParser class.
This is related in a way or an other to samtools, but I do not see any
CigarParser in libsam-java.
I wonder how the source code is stable ....
Any way, does anyone has an idea where this CigarParser may come from?
Olivier
>
> Olivier
>> Kind regards
>>
>> Andreas.
>>
>>
>> --
>> gpg key id: 4096R/326D8438 (keyring.debian.org)
>> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
>
>
> --
> gpg key id: 4096R/326D8438 (keyring.debian.org)
> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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