Re: Fwd: Flexbar 32-bit builds and SeqAn 1.4
Hi Tony,
On Thu, Jun 13, 2013 at 10:19:37AM +0100, Tony Travis wrote:
> Hi, Andreas.
>
> Johannes has asked me about 32-bit support for Flexbar.
>
> AFAIK, 32-bit support for tbb would be provided automatically by a tbb
> dependency of our Debian source package so we just need to enable 32-bit
> architecture in the control file. I've downloaded the upstream sources
> of Flexbar 2.34 and will build a new deb locally to try it out.
I did so as well because I had some spare minutes. I learned that the
quilt patch needed to be adapted a bit and I also just have implemented
my proposed changes to the manpage. Please find my changes in SVN.
I also enabled all architectures featuring libtbb-dev according to
http://packages.debian.org/sid/libtbb-dev
> Please advise me and Johannes about using SeqAn 1.4 for the package.
This takse a bit more time which I can not invest for the moment. IMHO
the more urgent thing is to finally do the upload to fix bug #705382.
So I will go on pushing flexbar 2.34 to the Debian mirror.
ToDo list for further package versions:
1. Try building against Debian packaged seqan.
2. Forwarding the manpage to the author and recommend distributing
it in his upstream tarball
3. Run the tests provided in the package
Kind regards and thanks for your engagement into the package despite
your time constraints
Andreas.
> Thanks,
>
> Tony.
>
> -------- Original Message --------
> Subject: Flexbar 32-bit builds and SeqAn 1.4
> Date: Tue, 21 May 2013 10:51:46 +0000
> From: Roehr, Johannes <Johannes.Roehr@mdc-berlin.de>
> To: Tony Travis <ajt@minke.ukfsn.org>
>
> Hi Tony,
>
> it is still a little bit unclear to me what I should do for Linux 32-bit
> support that Andreas and you talked of. As far as I understood, you want
> me to change the CMakeLists.txt file in the src directory of Flexbar to
> include a part in the conditional that specifies the link directories
> also in case of linux32 platform. This would imply to include also tbb
> library files for linux32 in the lib directory. This shouldn't be a
> problem, but I wonder if I got it right?
>
> I do not understand yet why that helps to support linux32 on your side,
> as I remove this conditional for platform dependant selection of tbb
> library files anyway for the source release, and as far as I know the
> tbb library files coming with Flexbar are not used for packaging. What
> am I missing here?
>
> By the way, the new SeqAn 1.4 release is out. I started to test it and
> so far everything looks good. I observed a strong increase in processing
> speed with the new library ;) There are still some points to check for
> me before I target complete inclusion and new binaries. I plan to get it
> done this week and will pass you a line as soon as it is finished. Once
> the new release is also available in Debian, one could use the SeqAn 1.4
> release instead of the version included in Flexbar.
>
> Best regards
> Johannes
>
>
>
>
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