debian-med.tsv
|
|
-1 == ignore, |
S = Source files |
A = Atomics |
|
|
|
not relevant |
E = Embedded |
E = Embedded library code |
|
|
|
|
F = False +ve |
F = False +ve |
|
|
|
|
|
L = Lowlevel |
|
|
|
|
|
O = OtherOS |
|
|
|
|
|
P = Performance |
|
|
Ubuntu |
|
|
S = Symbols/sections etc. |
|
Package name |
Version |
Priority |
Type |
Function |
Comments |
abyss |
1.3.4-2 |
20 |
E |
P |
Biology package; embedded x86 asm for popcnt; low priority for LEG |
bowtie |
|
20 |
E |
A |
ultrafast, memory-efficient short read aligner (science apps); x86 asm for atomics, no threading in the code otherwise; needs porting, but not a priority |
emboss |
6.4.0-4 |
0 |
F |
F |
Biology package; scanner confused by test data files with .s suffix |
genometools |
1.4.2-4 |
0 |
E |
P |
genome analysis toolkit; x86 asm in embedded libs (zlib, sqlite); no direct porting needed |
ginkgocadx |
2.12.0.4889-1ubuntu1 |
0 |
E |
L |
Medical Imaging Software; asm in embedded copy of sqlite; no direct porting needed |
gmap |
2012-06-12-1ubuntu1 |
20 |
E |
P |
Biology software; x86 asm for bitwise ops; not a priority |
gromacs |
4.5.5-2 |
10 |
SE |
P |
Scientific modelling package; asm for performance for some arches, but not A32/A64 |
jellyfish |
1.1.5-1 |
−1 |
E |
P |
genetics analysis; only supported on x86-64 because of internal fast maths routines; IGNORE |
maude |
2. 6. 02 |
20 |
E |
P |
framework/language for logic specification and programming; optional x86 asm for performance in embedded copy of dlmalloc; low priority |
mothur |
1.24.1-1 |
0 |
F |
F |
scientific sequence analysis suite; x86 asm for timer access, actually unused |
octave |
3.6.2-5 |
0 |
E |
E |
Embedded copy of gnulib; no direct porting needed |
paraview |
3.14.1-7 |
0 |
SE |
E |
Scientific visualisation tool; asm for performance in embedded libs (libpng, freetype, theora, sqlite, vtk); no direct porting needed AFAICS |
praat |
5.3.16-1 |
0 |
E |
E |
speech analysis and synthesis; asm in embedded codecs/libs (mad/mp3, flac, gsl, portaudio); no direct porting needed |
r-base |
2.15.2-1ubuntu1 |
0 |
SE |
EO |
GNU R statistical computation; asm in embedded libs (zlib/pcre/xz/valgrind/xdr/gettext), Windows support; no direct porting needed |
ugene |
1.9.8+repack-0ubuntu4 |
20 |
E |
ALOP |
integrated bioinformatics toolkit; optional x86 asm for CPUID, optional x86 asm for atomics with fallback to pthreads, (disabled) x86 asm for maths performance, Windows asm for debugging and timer access; would perform better with porting, but not a priority |