Re: [carlos.borroto@gmail.com: [SCM] tophat branch, oneiric-ppa, updated. oneiric-ppa/1.4.0-1_oneiric3-3-g3edf06d]
On Sun, Feb 5, 2012 at 2:45 PM, Andreas Tille <andreas@an3as.eu> wrote:
> Hi,
>
> just tell us if this package can be regarded as ready for uploading into
> unstable.
>
> Thanks for working on this
>
> Andreas.
Hi Andreas,
Is only missing manpages. I talked to Alexandre about it and it seems
we would have to use something like help2man. Upstream doesn't
includes any manpage.
Do you think the package can be uploaded without manpages? If not,
I'll try to find the time this week to work on it. There is a long
list of manpages to write:
$ dpkg -L tophat | grep /usr/bin/
/usr/bin/extract_reads
/usr/bin/segment_juncs
/usr/bin/contig_to_chr_coords
/usr/bin/juncs_db
/usr/bin/tophat
/usr/bin/gtf_to_fasta
/usr/bin/prep_reads
/usr/bin/long_spanning_reads
/usr/bin/sam_juncs
/usr/bin/gtf_juncs
/usr/bin/fix_map_ordering
/usr/bin/bam_merge
/usr/bin/sra_to_solid
/usr/bin/library_stats
/usr/bin/closure_juncs
/usr/bin/bed_to_juncs
/usr/bin/map2gtf
/usr/bin/tophat_reports
/usr/bin/wiggles
/usr/bin/mask_sam
/usr/bin/bam2fastx
Thanks,
Carlos
>
> ----- Forwarded message from Carlos Borroto <carlos.borroto@gmail.com> -----
>
> Date: Sun, 05 Feb 2012 19:32:54 +0000
> From: Carlos Borroto <carlos.borroto@gmail.com>
> To: debian-med-commit@lists.alioth.debian.org
> Subject: [SCM] tophat branch, oneiric-ppa,
> updated. oneiric-ppa/1.4.0-1_oneiric3-3-g3edf06d
>
> The following commit has been merged in the oneiric-ppa branch:
> commit 3edf06d8d7ca5c68afec489a7af0a661329377f1
> Author: Carlos Borroto <carlos.borroto@gmail.com>
> Date: Wed Jan 18 11:17:36 2012 -0500
>
> Uploaded tophat_1.4.0-1~oneiric4_source.changes to Debian Med's PPA.
>
> diff --git a/debian/changelog b/debian/changelog
> index f5bebda..5ed7715 100644
> --- a/debian/changelog
> +++ b/debian/changelog
> @@ -1,3 +1,9 @@
> +tophat (1.4.0-1~oneiric4) oneiric; urgency=low
> +
> + * merge with master
> +
> + -- Carlos Borroto <carlos.borroto@gmail.com> Wed, 18 Jan 2012 11:16:36 -0500
> +
> tophat (1.4.0-1~oneiric3) oneiric; urgency=low
>
> * merge with master
>
> --
> A spliced read mapper for RNA-Seq
>
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>
> ----- End forwarded message -----
>
> --
> http://fam-tille.de
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