Re: Tophat 2.0.6 is ready for upload
Hi Andreas,
I'm not familiar enough with Tophat to be able to tell if any of these
bugs are critical. They look like nice to have, but critical? I
couldn't tell. I think I prefer to leave this package as unreleased or
upload it to experimental until the freeze is over.
Thanks,
Carlos
On Sat, Nov 3, 2012 at 3:11 AM, Andreas Tille <andreas@an3as.eu> wrote:
> Hi Carlos,
>
> could you please mention whether one of those bugs below could be
> considered as "Release Critical"? If yes, we should file an apropriate
> bug to the Debian BTS. Otherwise we should probably consider an upload
> to experimental due to the rules in the times of freeze.
>
> Kind regards and thanks for your preparations
>
> Andreas.
>
> On Fri, Nov 02, 2012 at 10:38:39PM -0400, Carlos Borroto wrote:
>> Hi,
>>
>> New version Tophat 2.0.6 is ready for upload. I used
>> debian/get-orig-source to make sure SeqAn was removed correctly.
>>
>> This is a bug fix realease. Upstream changelog:
>> TopHat 2.0.6 release 11/02/2012
>> Version 2.0.6 is a maintenance release addressing some issues found in
>> the 2.0.5 release:
>> - corrected the indel finding algorithm that caused segmentation fault
>> in certain cases (long_spanning_reads and tophat_reports)
>> - fixed the Bowtie version checking code, adding support for newer,
>> non-beta Bowtie2 versions
>> - several minor fixes in the fusion alignment algorithm
>> - fixed an incompatibility issue with Python versions older than 2.6
>> (restoring Python 2.4 compatibility)
>> - fixed and improved the resuming option (-R/--resume) to better
>> handle various failure/resume situations
>> - added a warning about Bowtie1 and Bowtie2 index files in the same
>> directory (causing trouble if they were built for different genomic
>> sequences)
>>
>> Thanks,
>> Carlos
>>
>>
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