Re: Bug#680140: ITP: profbval -- PROFbval is a method for predicting residue mobility based on amino-acid sequence.
Another one of my students. Laszlo
On 04/07/12 08:54, Andreas Tille wrote:
> Hi,
>
> this sounds like a pretty interesting target for the Debian Med team.
> Would you consider joining the team and get support for sponsering and
> technical help if needed?
>
> Having written this text today the second time I suspect some connection
> to RostLab students. Is this correct?
>
> Kind regards
>
> Andreas.
>
>
> On Tue, Jul 03, 2012 at 09:16:49PM +0000, to_anger@freenet.de wrote:
>> Package: wnpp
>> Severity: wishlist
>> Owner: root <to_anger@freenet.de>
>>
>>
>> * Package name : profbval
>> Version : 1.0.16
>> Upstream Author : Guy Yachdav <gyachdav@rostlab.org>
>> * URL : http://www.predictprotein.org/docs.php
>> * License : GPL
>> Programming Lang: Perl
>> Description : predicts flexibile/rigid residues from sequence
>>
>> PROFbval is a neural-network based trained on backbone B-value data from X-ray structure. PROFbval was trained on a sequence
>> unique set of high-resolution protein structures from the PDB.
>>
>> The mobility of a given residue on the protein surface is related to its functional role. A common measure of atom mobility in
>> proteins is B-value data from x-ray crystallography structures. PROFbval is a method predicting backbone B-values from amino-
>> acid sequence. PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can
>> locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a
>> crystallographer can locate residues that potentially have high experimental B-values.
>>
>>
>>
>> --
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>>
>>
>
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