Which version of BWA for Wheezy ?

[Charles Plessy <plessy@debian.org>]

Dear all,

sorry for having postponed the question for so long...

Last year, I uploaded by mistake BWA version 0.6.0 to Unstable instead of
Exprimental.  The 0.6 line is backward incompatible for the genome indexes,
and needs twice more memory as the 0.5 line.

I wonder about the following options.

 - Do nothing.

 - Update the package to add a NEWS screen that will warn the users
   upgrading from Squeeze that if they do not cancel the update of
   BWA, they will need to recompute their indexes, and they may run
   out of memory for alignments that were posssible before.

 - Ship 0.5.9 in Wheezy, under the version number 0.6.1-really-0.5.9.

What do you think ?

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan