Re: mjt package / f2j, jlapack, netlib
----- Mail original -----
> De: "Andreas Tille" <andreas@an3as.eu>
> À: debian-med@lists.debian.org
> Envoyé: Lundi 26 Mars 2012 22:45:12
> Objet: Re: mjt package / f2j, jlapack, netlib
> Hi Olivier,
>
> On Mon, Mar 26, 2012 at 05:19:44PM +0200, Olivier Sallou wrote:
> > I could create packages for f2j, jlapack and netlib.
> > Andreas, you can get generated debs at [0]. Files are also in SVN,
> > waiting for validation before I upload.
>
> Many thanks for your work on this.
>
> > I will have to upload them in order (f2j -> jlapack -> netlib)
> > because
>
> So I tried to pdebuild f2j but (boring enough) it failed:
>
> ...
> (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
> (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
>
> ! Package hyperref Error: Wrong DVI mode driver option `ps2pdf',
> (hyperref) because pdfTeX or LuaTeX is running in PDF mode.
>
> See the hyperref package documentation for explanation.
> Type H <return> for immediate help.
> ...
>
> l.3925 \ProcessKeyvalOptions{Hyp}
>
> ?
> ! Emergency stop.
> ...
>
> l.3925 \ProcessKeyvalOptions{Hyp}
>
> ! ==> Fatal error occurred, no output PDF file produced!
> Transcript written on f2j_ug.log.
> make[2]: *** [all] Error 1
>
>
> This is pretty strange because the testing pdflatex works perfectly.
> Usually the reasons for such fail is a missing Build-Depends but I
> have
> no idea which one. Considering the fact that upstream provides a
> prebuilded PDF I wonder whether it makes more sense to prevent the PDF
> building at all. Ftpmaster only requests the *availability* of the
> LaTeX-Source not that it is actually builded in the packaging process.
> This would make building faster because it enables us droping some
> Build-Depends and we need to tweak the Makefile patch to simply do
> nothing.
>
> What do you think?
It indeed fails with pbuilder, maybe a matter of config. I gonna remove doc generation as it is indeed available with source.
Once ok I will upload this first package
>
> > there is a dependency and I need each other to validate them with
> > pbuilder...
>
> This is correct. So we just should go on uploading f2j. I would
> volunteer to prevent the PDF building process (but I can not do this
> tomorrow because I'm defacto offline).
>
> > However generated deb will help you validate them.
> >
> > I tested a build if libmtj with, in build.xml:
> > <property name="src.dir" value="src"/>
> > <property name="javac.classpath"
> > value="/usr/share/java/junit.jar:/usr/share/java/f2jutil.jar:/usr/share/java/netlib-java-0.9.3.jar"/>
> >
> > and it worked.
> >
> > Regarding the licensing issue of jlapack, I do not need to make the
> > modificiation but just to skip it from source. Indeed, the code does
> > not
> > use it in our configuration. The other files should be ok.
>
> Sounds very good.
>
> > Please tell me if packages are ok according to your tests with your
> > package, and I will upload them.
> >
> > [0] http://people.debian.org/~osallou/WIP/
>
> I can confirm that using your *.deb files and the above patch for the
> build.xml
> I can build
>
> dist/Matrix_Toolkits_for_Java.jar
>
> which looks pretty similar to the mtj.jar provide with beast-mcmc. The
> only difference is that in mtj.jar there is a directory
>
> /no/uib/cipr/matrix/nni
>
> which is missing in dist/Matrix_Toolkits_for_Java.jar .
>
> I tried to feed this into the beast-mcmc source and it somehow seems
> to
> work but I stumbled upon some similar buuld problem of the
> documentation
> (and for Beast I need to care for this because there are no PDFs,
> thought). So lets assume for the moment we are on the right track and
> start finalising f2j first and continue with the remaining. Meanwhile
> I will care for the pdflatex problem.
>
> Kind regards and thanks again for your work
>
> Andreas.
>
> --
> http://fam-tille.de
>
>
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