Adding Rostlab packages to our tasks files
Hi,
by chance I had a look into the packages in trunk/packages/rostlab/.
When doing so I noticed that not all of these are mentioned in our tasks
file. This is important to enable easy installation via metapackages
as well as advertising our pages in the web sentinel at
http://debian-med.alioth.debian.org/tasks/bio
BTW, I stumbled upon the WIki page from Rostlab at
https://www.rostlab.org/owiki/index.php/Packages
and it seems that not every information about the Debian packaged
software is up to date. If I where you I would probably try to link to
the according packages.debian.org page or alternatively to the
corresponding entry in the web sentinel above (just append #pkgname to
the link above) which is probably even more helpfull to guide the user
to relevant packages with one click.
I would like you to review ma decisions to insert the missing packages
below into bio and bio-dev task. Is this OK for you?
Kind regards
Andreas.
----- Forwarded message from tille@users.alioth.debian.org -----
Date: Tue, 10 Jan 2012 07:43:03 -0000
From: tille@users.alioth.debian.org
To: blends-commit@lists.alioth.debian.org
Subject: r3111 - in /projects/med/trunk/debian-med/tasks:
bio bio-dev
Author: tille
Date: Tue Jan 10 07:43:02 2012
New Revision: 3111
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3111
Log:
Added Rostlab packages to according tasks
Modified:
projects/med/trunk/debian-med/tasks/bio
projects/med/trunk/debian-med/tasks/bio-dev
Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3111&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Jan 10 07:43:02 2012
@@ -3005,9 +3005,11 @@
Depends: abacas
-Depends: profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd-net
+Depends: profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun
X-Remark: The profnet homepage contains an image of a complete Debian system. The Debian Med
team tries to support the authors by providing binary packages inside Debian.
+
+Depends: profphd-net, profphd-utils
Depends: abyss
Published-Title: ABySS: A parallel assembler for short read sequence data
@@ -3029,6 +3031,8 @@
Depends: populations
Depends: raccoon
+
+Depends: librg-utils-perl
Depends: snap
Published-Authors: I. Korf
@@ -3854,6 +3858,9 @@
University of California, Berkeley Departments of Mathematics and
Molecular and Cell Biology.
+Depends: reprof
+Responsible: Peter Hoenigschmid <hoenigschmid@rostlab.org>
+Homepage: https://www.rostlab.org/owiki/index.php/Packages
Comment: Several related R packages are listed at CRAN:
http://cran.r-project.org/web/views/Genetics.html
Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=3111&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Tue Jan 10 07:43:02 2012
@@ -68,6 +68,8 @@
Depends: libstaden-read-dev
Depends: libsrf-dev
+
+Depends: libzerg-dev, libzerg-perl
Suggests: r-cran-rocr
Why: Even if this package is not directly connected to biology it is maintained by
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