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Adding Rostlab packages to our tasks files


by chance I had a look into the packages in trunk/packages/rostlab/.
When doing so I noticed that not all of these are mentioned in our tasks
file.  This is important to enable easy installation via metapackages
as well as advertising our pages in the web sentinel at


BTW, I stumbled upon the WIki page from Rostlab at


and it seems that not every information about the Debian packaged
software is up to date.  If I where you I would probably try to link to
the according packages.debian.org page or alternatively to the
corresponding entry in the web sentinel above (just append #pkgname to
the link above) which is probably even more helpfull to guide the user
to relevant packages with one click.

I would like you to review ma decisions to insert the missing packages
below into bio and bio-dev task.  Is this OK for you?

Kind regards


----- Forwarded message from tille@users.alioth.debian.org -----

Date: Tue, 10 Jan 2012 07:43:03 -0000
From: tille@users.alioth.debian.org
To: blends-commit@lists.alioth.debian.org
Subject: r3111 - in /projects/med/trunk/debian-med/tasks:
	bio bio-dev

Author: tille
Date: Tue Jan 10 07:43:02 2012
New Revision: 3111

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3111
Added Rostlab packages to according tasks


Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3111&op=diff
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Tue Jan 10 07:43:02 2012
@@ -3005,9 +3005,11 @@
 Depends: abacas
-Depends: profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd-net
+Depends: profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun
 X-Remark: The profnet homepage contains an image of a complete Debian system.  The Debian Med
           team tries to support the authors by providing binary packages inside Debian.
+Depends: profphd-net, profphd-utils
 Depends: abyss
 Published-Title: ABySS: A parallel assembler for short read sequence data
@@ -3029,6 +3031,8 @@
 Depends: populations
 Depends: raccoon
+Depends: librg-utils-perl
 Depends: snap
 Published-Authors: I. Korf
@@ -3854,6 +3858,9 @@
  University of California, Berkeley Departments of Mathematics and
  Molecular and Cell Biology.
+Depends: reprof
+Responsible: Peter Hoenigschmid <hoenigschmid@rostlab.org>
+Homepage: https://www.rostlab.org/owiki/index.php/Packages
 Comment: Several related R packages are listed at CRAN:

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=3111&op=diff
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Tue Jan 10 07:43:02 2012
@@ -68,6 +68,8 @@
 Depends: libstaden-read-dev
 Depends: libsrf-dev
+Depends: libzerg-dev, libzerg-perl
 Suggests: r-cran-rocr
 Why: Even if this package is not directly connected to biology it is maintained by

Blends-commit mailing list

----- End forwarded message -----


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