Hi Andreas,You probably know this, but bsub is the submission command for the LSF computer cluster submission software. It is what the Ensembl team use internally for batch submission.
My point is that there are many utility scripts ( like ensembl-variation/scripts/import/run.me ) hanging about in the ensembl code that are not needed at all in order to have a fully functioning website and API code. They are only used internally by the Ensembl team as they develop new data for a new release. As they are only intended for internal use they tend to be very tied to the exact platform they develop on ( in this case LSF, with perl in /usr/local/ensembl/bin/perl and a shared dir on /ecs2/scratch3/ ).
My suggestion is that we just ignore this script as it is not needed for Ensembl to run.
Thanks, Nick On 08/12/11 16:26, Andreas Tille wrote:
Hi Nick, On Thu, Dec 08, 2011 at 03:56:20PM +0000, Nick James wrote:Just a quick post to introduce myself. ...welcome in the team. I think I had your address in CC in my mail yesterday concerning some Ensembl issues. It would be great if you could contact Ensembl authors about this. I hope you feel comfortable with all the docs I just recommended - feel free to ask any question here. Kind regards and thanks for the introduction Andreas.