Re: circos: missing dep
Hi,
On Sat, Jul 16, 2011 at 02:52:23PM +0200, Olivier Sallou wrote:
> Hi, indeed, dependency was missing (which is quite surprising as I did myself the package for this dependency).... I missed it as it is not required for building and already installed on my computer.
> Thank you for adding it, I won't be able to do so before at least Thursday. Monday or later will be fine, there is no urgent need.
I added the missing Depends and enhanced the description of the
tutorials package. However, I have another issue which might
worth fixing before the first upload:
$ circos -conf /etc/circos/brewer.conf
debug: using configuration file input /etc/circos/brewer.conf
debuglib: using configuration input /etc/circos/brewer.conf
debuglib: loading configuration from file /etc/circos/brewer.conf
Error: no karotype file specified at /usr/share/perl5/Circos/Configuration.pm line 242
Circos::Configuration::validateconfiguration() called at /usr/share/perl5/Circos.pm line 138
Circos::run('Circos', 'configfile', '/etc/circos/brewer.conf') called at /usr/bin/circos line 224
... perhaps that's an issue of just reading the tutorial even if I
wished to get more precise advise what to do as new user. But my
real point is:
$ circos -conf colors.conf
debug: using configuration file input colors.conf
debuglib: using configuration input colors.conf
debuglib: loading configuration from file colors.conf
Tried finding one of these configuration files, but failed.
colors.conf
/usr/bin/colors.conf
/usr/bin/../colors.conf
/usr/bin/etc/colors.conf
/usr/bin/../etc/colors.conf
/home/tillea/.circos.conf
/usr/bin/circos.conf
/usr/bin/etc/circos.conf
/usr/bin/../etc/circos.conf
error - could not find any configuration file to use - did you use -conf configfile.conf? at /usr/share/perl5/Circos/Configuration.pm line 190
Circos::Configuration::loadconfiguration('colors.conf') called at /usr/share/perl5/Circos.pm line 130
Circos::run('Circos', 'configfile', 'colors.conf') called at /usr/bin/circos line 224
The default search path for configuration files should be adjusted in a
way that the directory where they are stored in the Debian package is
seeked as well. It's quite nasty to force the user to type a comlpete
path in every case.
Kind regards
Andreas.
--
http://fam-tille.de
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