Re: software for tasks/imaging
On Wed, Mar 25, 2009 at 08:09:56PM -0500, Steve M. Robbins wrote:
> On Wed, Mar 25, 2009 at 08:13:24AM +0100, Michael Hanke wrote:
>
> > I took a quick look and it seems to be an easy target for packaging (at
> > first sight only the manpage seems to need some corrections/additions.
> >
> > However, it would be great to have a set of data to test its proper
> > functioning. The manpage refers to a 'phantom10.mnc.Z' file (for the
> > tissue segmentation template), which is not available. As I understand
> > it, I could easily generate one with 'fast' from FSL. However, I also
> > need to specify parameter files (tissue.prm, ...). While the manpage
> > describes them, there is no example in the tarball...
> >
> > Do you have by any chance a set of such files to test mrisim?
>
> MRISim is the code behind brainweb [1] I'd expect that the model
> provided there [2] is suitable input for it. The tissue parameters
> are provided [3], too.
>
> In addition, there are 20 new models on the site, but they seem to
> have a different set of tissue classes, so be careful of the MR
> parameters file.
Thanks for the pointers. However the content of the tissue parameter
files required by the latest code seems to be different than what is in
the one I downloaded from the web -- against it needs some more
investigations. I guess that has to wait ....
Thanks,
Michael
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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