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Re: Maq: Strange 64bit issue

On Mon, 7 Jul 2008, Charles Plessy wrote:

Anyway, Maq had a nice advertisement in a recent review published in
Genome Research, and it is therefore definitely one of the programs we
must add to our collection before the end of the year. I just imported
a rudimentary packaging in our subversion repository. Unfortunately, the
binary building also fails on my machine (powerpc):

OK - you might have noticed that I added some info to debian/control
and I'll add it to our tasks.

g++ -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o pair_stat.o pair_stat.ccg++ -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o indel_soa.o indel_soa.ccindel_soa.cc: In function ?void fill_counter(bit32_t*, int, nst_bfa1_t*, void*)?:
indel_soa.cc:42: warning: suggest parentheses around + or - inside shift
indel_soa.cc:56: warning: suggest parentheses around + or - inside shift
cc -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c maqmap.c
cc -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c maqmap_conv.c
g++ -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o altchr.o altchr.cc
cc -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c submap.c
g++ -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o rmdup.o rmdup.cc
cc -DHAVE_CONFIG_H -I.     -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c simulate.c
simulate.c: In function ?simustat_core?:
simulate.c:374: internal compiler error: in expand_expr_real_1, at expr.c:9199

Ups, that's several steps earlier in compile process.  Will you investigate
in this on powerpc list?  I think I'll try the issue on debian-devel (trusting
that there are enough people with apropriate knowledge).

Thanks for your input



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