This is the last call for comments for the review of debconf templates for biomaj. The reviewed templates will be sent on Wednesday, January 11, 2012 to this bug report and a mail will be sent to this list with "[BTS]" as a subject tag. --
Template: biomaj/mysql Type: boolean _Description: Configure MySQL connection now? Once the MySQL database for BioMAJ has been created and configured, it can populate itself automatically instead of needing to be updated manually. . Please specify whether the database connection should be configured now. Template: biomaj/mysql_host Type: string _Description: MySQL server: Please enter the hostname or IP address of the MySQL server you want to use. Template: biomaj/mysql_login Type: string _Description: MySQL login for BioMAJ database: Please enter the login to use when connecting to the MySQL database server to access the biomaj_log database. Template: biomaj/mysql_passwd Type: password _Description: MySQL password for BioMAJ database: Please enter the password to use when connecting to the MySQL database server to access the biomaj_log database.
Source: biomaj
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <olivier.sallou@irisa.fr>
DM-Upload-Allowed: yes
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biomaj/trunk/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/?rev=0&sc=0
Homepage: http://biomaj.genouest.org
Build-Depends: debhelper (>= 7.1)
Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib,
liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java,
libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java,
libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java,
javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,
libjets3t-java
Standards-Version: 3.9.2
Package: biomaj
Architecture: all
Depends: ${misc:Depends}, ${java:Depends},
openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf,
libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2),
libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2),
liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42),
libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java,
libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl,
mysql-server
Suggests: ncbi-tools-bin, blast2
Description: biological data-bank updater
BioMAJ downloads remote data banks, checks their status and applies
transformation workflows, with consistent state, to provide ready-to-use
data for biologists and bioinformaticians. For example, it can transform
original FASTA files into BLAST indexes. It is very flexible and its
post-processing facilities can be extended very easily.
Package: biomaj-properties
Architecture: all
Depends: ${misc:Depends}
Description: biological data-bank updater - example properties files
This package contains a set of data bank properties files that can be
used as examples for BioMAJ. It contains descriptions for many existing
data banks with or without workflows to transform data. Some files may
require additional programs (such as BLAST) for post-processing.
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