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After making some backups, I tried to upgrade the kernel again.
Guess what? It just works now.
The term.log section looks nothing like the one above.
Also the old kernel has been retained.
term.log:
Log started: 2011-08-22 22:23:29
(Reading database ... M(Reading database ... 5%M(Reading database ...
10%M(Reading
Preparing to replace initramfs-tools 0.98.8 (using
.../initramfs-tools_0.99_all.deb
Unpacking replacement initramfs-tools ...M
Selecting previously deselected package
linux-image-2.6.39-bpo.2-amd64.M
Unpacking linux-image-2.6.39-bpo.2-amd64 (from
.../linux-image-2.6.39-bpo.2-amd64_2
Processing triggers for man-db ...M
Setting up initramfs-tools (0.99) ...M
Installing new version of config file /etc/kernel/postrm.d/initramfs-tools
...M
Installing new version of config file
/etc/kernel/postinst.d/initramfs-tools ...M
Installing new version of config file /etc/initramfs-tools/initramfs.conf
...M
update-initramfs: deferring update (trigger activated)M
Setting up linux-image-2.6.39-bpo.2-amd64 (2.6.39-3~bpo60+1) ...M
Running depmod.M
Examining /etc/kernel/postinst.d.M
run-parts: executing /etc/kernel/postinst.d/initramfs-tools
2.6.39-bpo.2-amd64 /boo
update-initramfs: Generating /boot/initrd.img-2.6.39-bpo.2-amd64M
run-parts: executing /etc/kernel/postinst.d/zz-update-grub
2.6.39-bpo.2-amd64 /boot
Generating grub.cfg ...M
Found linux image: /boot/vmlinuz-2.6.39-bpo.2-amd64M
Found initrd image: /boot/initrd.img-2.6.39-bpo.2-amd64M
Found linux image: /boot/vmlinuz-2.6.38-bpo.2-amd64M
Found initrd image: /boot/initrd.img-2.6.38-bpo.2-amd64M
Found linux image: /boot/vmlinuz-2.6.32-5-amd64M
Found initrd image: /boot/initrd.img-2.6.32-5-amd64M
doneM
Processing triggers for initramfs-tools ...M
update-initramfs: Generating /boot/initrd.img-2.6.39-bpo.2-amd64M
Log ended: 2011-08-22 22:24:39
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