Bug#745085: biojava3-live: FTBFS with Java 8: NullPointerException at java.util.Collections$UnmodifiableCollection.<init>(Collections.java:1086)
Source: biojava3-live
Version: 3.0.7+dfsg-1
Severity: important
User: debian-java@lists.debian.org
Usertags: openjdk-8-transition
Hi,
During a rebuild of all Java packages in sid with OpenJDK 8,
your package failed to build with the following error:
[junit] Testcase: testParseHeader took 0.022 sec
[junit] Running org.biojava3.core.sequence.location.LocationParserTest
[junit] Testsuite: org.biojava3.core.sequence.location.LocationParserTest
[junit] Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 0.034 sec
[junit] Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 0.034 sec
[junit]
[junit] Testcase: moreComplex took 0.01 sec
[junit] Caused an ERROR
[junit] null
[junit] java.lang.ExceptionInInitializerError
[junit] at org.biojava3.core.sequence.location.LocationParserTest.moreComplex(LocationParserTest.java:63)
[junit] Caused by: java.lang.NullPointerException
[junit] at java.util.Collections$UnmodifiableCollection.<init>(Collections.java:1086)
[junit] at java.util.Collections$UnmodifiableList.<init>(Collections.java:1362)
[junit] at java.util.Collections.unmodifiableList(Collections.java:1347)
[junit] at org.biojava3.core.sequence.location.template.AbstractLocation.<init>(AbstractLocation.java:111)
[junit] at org.biojava3.core.sequence.location.template.AbstractLocation.<init>(AbstractLocation.java:85)
[junit] at org.biojava3.core.sequence.location.SimpleLocation.<init>(SimpleLocation.java:57)
[junit] at org.biojava3.core.sequence.location.SimpleLocation.<init>(SimpleLocation.java:53)
[junit] at org.biojava3.core.sequence.location.template.Location.<clinit>(Location.java:48)
[junit]
[junit] Testcase: basicLocationTests took 0 sec
[junit] Caused an ERROR
[junit] Could not initialize class org.biojava3.core.sequence.location.SimpleLocation
[junit] java.lang.NoClassDefFoundError: Could not initialize class org.biojava3.core.sequence.location.SimpleLocation
[junit] at org.biojava3.core.sequence.location.LocationParserTest.basicLocationTests(LocationParserTest.java:15)
[junit]
BUILD FAILED
/«BUILDDIR»/biojava3-live-3.0.7+dfsg/biojava3-core/build.xml:97: Test org.biojava3.core.sequence.location.LocationParserTest failed
The full build log is available from:
http://87.98.165.193/debian/openjdk8-rebuild/logs-failed-jdk8/biojava3-live_3.0.7+dfsg-1_unstable_jdk8.log
You can download OpenJDK 8 packages for testing here:
http://87.98.165.193/debian/openjdk-8u5-b13/
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