Bug#855211: ITP: qcumber -- quality control of genomic sequences
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : qcumber
Version : 1.0.5
Upstream Author : Vivi Lieu <LieuV@rki.de>
* URL : https://gitlab.com/RKIBioinformaticsPipelines/QCumber
* License : LGPL
Programming Lang: Python
Description : quality control of genomic sequences
QCPipeline is a tool for quality control. The workflow is as follows:
.
1. Quality control with FastQC
2. Trim Reads with Trimmomatic
3. Quality control of trimmed reads with FastQC
4. Map reads against reference using bowtie2
5. Classify reads with Kraken
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