Bug#828189: ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis
Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>
* Package name : r-bioc-dnacopy
Version : 1.46.0
Upstream Author : Venkatraman E. Seshan <seshanv@mskcc.org>
* URL : http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html
* License : GPL-2.0+
Programming Lang: R
Description : R package: DNA copy number data analysis
Implements the circular binary segmentation (CBS) algorithm to segment DNA
copy number data and identify genomic regions with abnormal copy number.
.
This package is for analyzing array DNA copy number data, which is usually
(but not always) called array Comparative Genomic Hybridization (array CGH)
data It implements a methodology for finding change-points in these data which
are points after which the (log) test over reference ratios have changed
location. This model is that the change-points correspond to positions where
the underlying DNA copy number has changed. Therefore, change-points can be
used to identify regions of gained and lost copy number. We also provide a
function for making relevant plots of these data.
This is a dependency for r-cran-pscbs and will be team maintained by the Debian Med team
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