[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#828189: ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis

Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>

* Package name    : r-bioc-dnacopy
  Version         : 1.46.0
  Upstream Author : Venkatraman E. Seshan <seshanv@mskcc.org>
* URL             : http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html
* License         : GPL-2.0+
  Programming Lang: R
  Description     : R package: DNA copy number data analysis

 Implements the circular binary segmentation (CBS) algorithm to segment DNA
 copy number data and identify genomic regions with abnormal copy number.
 This package is for analyzing array DNA copy number data, which is usually
 (but not always) called array Comparative Genomic Hybridization (array CGH)
 data It implements a methodology for finding change-points in these data which
 are points after which the (log) test over reference ratios have changed
 location. This model is that the change-points correspond to positions where
 the underlying DNA copy number has changed. Therefore, change-points can be
 used to identify regions of gained and lost copy number. We also provide a
 function for making relevant plots of these data.

This is a dependency for r-cran-pscbs and will be team maintained by the Debian Med team

Reply to: