Bug#798872: ITP: pbcommand -- common command-line interface for Pacific Biosciences analysis modules
Owner: Debian Med Packaging Team <email@example.com>
Control: block 797676 by -1
* Package name : pbcommand
Version : 0.2.8
Upstream Author : Pacific Biosciences <firstname.lastname@example.org>
* URL : https://github.com/PacificBiosciences/pbcommand
* License : BSD
Programming Lang: Python
Description : common command-line interface for Pacific Biosciences analysis modules
To integrate with the pbsmrtpipe workflow engine, you must to be able to
generate a Tool Contract and to be able to run from a Resolved Tool Contract.
A Tool Contract contains the metadata of the exe, such as the file types of
inputs, outputs and options.
There are two principal use cases, first wrapping/calling python functions that
have been defined in external python packages, or scripts. Second, creating a
CLI tool that supports emitting tool contracts, running resolved tool contracts
and complete argparse-style CLI.
This package is part of the SMRT Analysis suite and is to be handled by
the Debian Med team.