Bug#408347: ITP: proda -- multiple alignment of protein sequences with repeated and shuffled elements
Owner: Charles Plessy <firstname.lastname@example.org>
Package name : proda
Version : 1.0
Upstream Author : Tu Minh Phuong, Chuong Do, Robert Edgar, and Serafim Batzoglou
URL : http://proda.stanford.edu/
License : Public domain
Description : multiple alignment of protein sequences with repeated and shuffled elements
ProDA is a system for automated detection and alignment of homologous
regions in collections of proteins with arbitrary domain architectures.
Given an input set of unaligned sequences, ProDA identifies all
homologous regions appearing in one or more sequences, and returns a
collection of local multiple alignments for these regions.
ProDA is published in: Phuong T.M., Do C.B., Edgar R.C., and Batzoglou
S. Multiple alignment of protein sequences with repeats and
rearrangements. Nucleic Acids Research 2006 34(20), 5932-5942.
-- System Information:
Debian Release: 3.1
Architecture: i386 (i686)
Kernel: Linux 2.6.16-2-486
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)