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Problem with dpkg-source

I've finally gotten around to converting libc5 to the new source
format.  I'm all done except for one little problem.  dpkg-source
doesn't like the fact that the Debianized source has additional
directories, specifically the kernel headers in include/linux,
include/asm-*, etc.  As far as I can tell, the "-t" option being
passed to patch is the cause of the problem as it forces patch to
ignore patches for which an original file can't be found.  What can I
do about this?  Lumping the ~600 or so kernel header files into the
main directory and having debian/rules sort it all out is NOT an
option as far as I'm concerned.

David Engel                        ODS Networks
david@sw.ods.com                   1001 E. Arapaho Road
(972) 234-6400                     Richardson, TX  75081

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