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Bug#920546: dolfin: flaky autopkgtest as it times out sometimes



Source: dolfin
Version: 2018.1.0.post1-13
Severity: important
X-Debbugs-CC: debian-ci@lists.debian.org
User: debian-ci@lists.debian.org
Usertags: flaky timeout

Dear maintainers,

Since you uploaded your package version 2018.1.0.post1-13, it has failed
several times on your test-dolfin-cpp test on the ci.debian.net
infrastructure due to timeouts of autopkgtest (after 10000 seconds).
Could you please investigate and make your autopkgtest more robust
against this time out? Please contact me if you need help and you think
I can provide that (I am not subscribed to this bug).

Recent discussion of gating migration by autopkgtests on debian-devel
[1] noted that if this is going to work, and in particular now we are
*blocking* migration when it causes autopkgtest regressions,
intermittent autopkgtest failures are likely to have to be considered RC
due to their impact on the tested package's dependencies; for now I've
filed it as important. I noticed this issue because the dolfin
regression was blocking pkg-config.

Paul

[1] https://lists.debian.org/debian-devel/2018/05/msg00061.html

https://ci.debian.net/data/autopkgtest/testing/amd64/d/dolfin/1764909/log.gz

Total Test time (real) = 135.57 sec
running C++ demos (MPI)
Test project /tmp/autopkgtest-lxc.6bsy1myv/downtmp/build.toR/src/dolfin-demo
      Start  1: demo_poisson_mpi
 1/48 Test  #1: demo_poisson_mpi .......................   Passed
1.49 sec
      Start  3: demo_neumann-poisson_mpi
 2/48 Test  #3: demo_neumann-poisson_mpi ...............   Passed
1.88 sec
      Start  5: demo_biharmonic_mpi
 3/48 Test  #5: demo_biharmonic_mpi ....................   Passed
1.63 sec
      Start  7: demo_stokes-iterative_mpi
 4/48 Test  #7: demo_stokes-iterative_mpi ..............   Passed
33.78 sec
      Start  9: demo_built-in-meshes_mpi
 5/48 Test  #9: demo_built-in-meshes_mpi ...............   Passed
3.35 sec
      Start 11: demo_mixed-poisson_mpi
 6/48 Test #11: demo_mixed-poisson_mpi .................   Passed
2.20 sec
      Start 13: demo_auto-adaptive-poisson_mpi
 7/48 Test #13: demo_auto-adaptive-poisson_mpi .........   Passed
0.85 sec
      Start 15: demo_nonmatching-interpolation_mpi
 8/48 Test #15: demo_nonmatching-interpolation_mpi .....   Passed
0.84 sec
      Start 17: demo_eigenvalue_mpi
 9/48 Test #17: demo_eigenvalue_mpi ....................   Passed
2.25 sec
      Start 19: demo_periodic_mpi
10/48 Test #19: demo_periodic_mpi ......................   Passed
1.50 sec
      Start 21: demo_nonlinear-poisson_mpi
11/48 Test #21: demo_nonlinear-poisson_mpi .............   Passed
1.57 sec
      Start 23: demo_subdomains_mpi
12/48 Test #23: demo_subdomains_mpi ....................   Passed
0.82 sec
      Start 25: demo_singular-poisson_mpi
13/48 Test #25: demo_singular-poisson_mpi ..............   Passed
1.91 sec
      Start 27: demo_bcs_mpi
14/48 Test #27: demo_bcs_mpi ...........................   Passed
2.72 sec
      Start 30: demo_navier-stokes_mpi
15/48 Test #30: demo_navier-stokes_mpi .................   Passed
30.14 sec
      Start 32: demo_parallel-refinement_mpi
16/48 Test #32: demo_parallel-refinement_mpi ...........   Passed
1.18 sec
      Start 34: demo_contact-vi-snes_mpi
17/48 Test #34: demo_contact-vi-snes_mpi ...............   Passed
2.84 sec
      Start 36: demo_multimesh-poisson_mpi
18/48 Test #36: demo_multimesh-poisson_mpi .............   Passed
0.85 sec
      Start 38: demo_dg-poisson_mpi
19/48 Test #38: demo_dg-poisson_mpi ....................   Passed
1.74 sec
      Start 40: demo_parameters_mpi
20/48 Test #40: demo_parameters_mpi ....................   Passed
0.91 sec
      Start 42: demo_contact-vi-tao_mpi
21/48 Test #42: demo_contact-vi-tao_mpi ................   Passed
1.84 sec
      Start 44: demo_conditional_mpi
22/48 Test #44: demo_conditional_mpi ...................   Passed
2.10 sec
      Start 46: demo_lift-drag_mpi
23/48 Test #46: demo_lift-drag_mpi .....................   Passed
1.26 sec
      Start 48: demo_time-series_mpi
24/48 Test #48: demo_time-series_mpi ...................   Passed
0.83 sec
      Start 50: demo_waveguide_mpi
25/48 Test #50: demo_waveguide_mpi .....................   Passed
1.41 sec
      Start 52: demo_refinement_mpi
26/48 Test #52: demo_refinement_mpi ....................   Passed
1.80 sec
      Start 54: demo_extrapolation_mpi
27/48 Test #54: demo_extrapolation_mpi .................   Passed
0.82 sec
      Start 56: demo_ale_mpi
28/48 Test #56: demo_ale_mpi ...........................   Passed
1.38 sec
      Start 58: demo_dg-advection-diffusion_mpi
autopkgtest [03:49:59]: ERROR: timed out on command "su -s /bin/bash
debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 ||
true;  . ~/.profile >/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.6bsy1myv/downtmp/build.toR/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.6bsy1myv/downtmp/test-dolfin-cpp-artifacts";
export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.6bsy1myv/downtmp/test-dolfin-cpp-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.6bsy1myv/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.6bsy1myv/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=2; unset LANGUAGE
LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY LC_MESSAGES
LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod
+x
/tmp/autopkgtest-lxc.6bsy1myv/downtmp/build.toR/src/debian/tests/test-dolfin-cpp;
touch /tmp/autopkgtest-lxc.6bsy1myv/downtmp/test-dolfin-cpp-stdout
/tmp/autopkgtest-lxc.6bsy1myv/downtmp/test-dolfin-cpp-stderr;
/tmp/autopkgtest-lxc.6bsy1myv/downtmp/build.toR/src/debian/tests/test-dolfin-cpp
2> >(tee -a /tmp/autopkgtest-lxc.6bsy1myv/downtmp/test-dolfin-cpp-stderr
>&2) > >(tee -a
/tmp/autopkgtest-lxc.6bsy1myv/downtmp/test-dolfin-cpp-stdout);" (kind: test)
autopkgtest [03:50:00]: test test-dolfin-cpp: -----------------------]

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