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Debian changes active partition?



I don't know if its just my screwed up system or debian, but this has happened twice now.

Installed debian once with the w32 installer and once with the normal installer. Both times I chose not to install the MBR. Upon rebooting I found my system unbootable. To fix it I had to boot with hiren's and mark my windows system partition as active, after which it happily booted into windows.
Wat is happening?


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