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Bug#1109428: marked as done (ITP: python-ihm -- handles mmCIF protein structure data)

Your message dated Mon, 18 Aug 2025 18:10:11 +0000
with message-id <E1uo4J9-00GTTL-2Y@fasolo.debian.org>
and subject line Bug#1109428: fixed in python-ihm 2.7-1
has caused the Debian Bug report #1109428,
regarding ITP: python-ihm -- handles mmCIF protein structure data
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1109428: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1109428
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <moeller@debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, moeller@debian.org

* Package name    : python-ihm
  Version         : 2.7
* URL             : https://github.com/ihmwg/python-ihm
* License         : MIT/X
  Programming Lang: Python
  Description     : handles mmCIF protein structure data

 This Python package assists in handling mmCIF and BinaryCIF files
 compliant with the integrative/hybrid modeling (IHM) extension.
 To handle non-integrative theoretical models (for example, homology
 models), see the python-modelcif package which supports files compliant
 with the ModelCIF extension.
 .
 Provided mechanisms to describe an integrative modeling application includes:
 * the data used for the modeling, such as previous computional models from
   comparative or integrative modeling, and experimental datasets from
   X-ray crystallography, mass spectrometry, electron microscopy;
 * the protocol used to generate models, such as molecular dynamics, clustering, and rescoring;
 * the actual coordinates of output models, which may be multi-scale
   (including both atomic coordinates and more coarse-grained
   representations), multi-state (multiple conformations and/or compositions
   of the system needed to explain the input data), or ordered (such as
   different points in a chemical reaction);
 * grouping of multiple models into ensembles or clusters;
 * validation of models, for example by scoring against data not used in the modeling itself.
 .
 Once created, such a set of Python objects can be written to an mmCIF
 file that is compliant with the IHMCIF extension to the PDBx/mmCIF
 dictionary, suitable for deposition in the PDB-IHM repository. The files
 are best viewed in a viewer that supports IHMCIF, such as UCSF ChimeraX,
 although they may be partially viewable in regular PDBx mmCIF viewers
 (likely only the atomic coordinates will be visible).

 The packaging is performed transparently on Debian Med.

--- End Message ---
--- Begin Message --- 
Source: python-ihm
Source-Version: 2.7-1
Done: Steffen Moeller <moeller@debian.org>

We believe that the bug you reported is fixed in the latest version of
python-ihm, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1109428@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Steffen Moeller <moeller@debian.org> (supplier of updated python-ihm package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 16 Jul 2025 15:28:44 +0100
Source: python-ihm
Binary: python3-ihm python3-ihm-dbgsym
Architecture: source amd64
Version: 2.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
 python3-ihm - handles mmCIF protein structural data
Closes: 1109428
Changes:
 python-ihm (2.7-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #1109428)
Checksums-Sha1:
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Files:
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