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Bug#1029719: marked as done (ITP: libwfa2 -- exact gap-affine algorithm)

Your message dated Sat, 04 Feb 2023 02:10:15 +0000
with message-id <E1pO80N-003SbT-1f@fasolo.debian.org>
and subject line Bug#1029719: fixed in libwfa2 2.3.1-1
has caused the Debian Bug report #1029719,
regarding ITP: libwfa2 -- exact gap-affine algorithm
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1029719: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1029719
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: libwfa2 -- exact gap-affine algorithm
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : libwfa2
  Version         : 2.3.1
  Upstream Author : Santiago Marco-Sola <santiagomsola@gmail.com>
* URL             : https://github.com/smarco/WFA2-lib
* License         : MIT
  Programming Lang: C
  Description     : exact gap-affine algorithm
 The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm
 that takes advantage of homologous regions between the sequences to
 accelerate the alignment process. Unlike to traditional dynamic
 programming algorithms that run in quadratic time, the WFA runs in time
 O(ns+s^2), proportional to the sequence length n and the alignment score
 s, using O(s^2) memory (or O(s) using the ultralow/BiWFA mode).
 Moreover, the WFA algorithm exhibits simple computational patterns that
 the modern compilers can automatically vectorize for different
 architectures without adapting the code. To intuitively illustrate why
 the WFA algorithm is so interesting, look at the following figure. The
 left panel shows the cells computed by a classical dynamic programming
 based algorithm (like Smith-Waterman or Needleman Wunsch). In contrast,
 the right panel shows the cells computed by the WFA algorithm to obtain
 the same result (i.e., the optimal alignment).

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/libwfa2

--- End Message ---
--- Begin Message --- 
Source: libwfa2
Source-Version: 2.3.1-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
libwfa2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1029719@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated libwfa2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 26 Jan 2023 19:45:55 +0100
Source: libwfa2
Binary: libwfa2-0 libwfa2-0-dbgsym libwfa2-dev
Architecture: source amd64
Version: 2.3.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libwfa2-0  - exact gap-affine algorithm (shared library)
 libwfa2-dev - exact gap-affine algorithm (development)
Closes: 1029719
Changes:
 libwfa2 (2.3.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #1029719)
Checksums-Sha1:
 1898c6d10d6e8596e1398f8dac776f01d85a9386 2015 libwfa2_2.3.1-1.dsc
 3cc5280b451fbd22718b99d86ec5feed5293067c 4150652 libwfa2_2.3.1.orig.tar.gz
 4111800ca92090b4a4e3da91b51731b9c8e82eef 3348 libwfa2_2.3.1-1.debian.tar.xz
 0a60479d33664e8b416d388a46824a3c915da516 123516 libwfa2-0-dbgsym_2.3.1-1_amd64.deb
 4e9d8e608c99706f09d3688007f028bda4fdf368 42900 libwfa2-0_2.3.1-1_amd64.deb
 78321e1765be77935cb0f61222fef77fd15f393c 57104 libwfa2-dev_2.3.1-1_amd64.deb
 ef8eec863ea662d6f617b1827486c6fb7fd0ba6a 7191 libwfa2_2.3.1-1_amd64.buildinfo
Checksums-Sha256:
 87867e498cf56451f6cf35c48c68471f47ee2029626123cbddda17bf54a88816 2015 libwfa2_2.3.1-1.dsc
 a464b3e2a1e7debfa1224d434ecf3a004863e0c07b2e8dc5faeffe731f63db33 4150652 libwfa2_2.3.1.orig.tar.gz
 2b5b4ffc09fa0d3064fdcd2cd8d03910ae08f8c6345c57742c0cdc0bbe262372 3348 libwfa2_2.3.1-1.debian.tar.xz
 caa2e79caac1fce882a35f23c79e290889c34718c1ef5a39354a37a6a3ca7d50 123516 libwfa2-0-dbgsym_2.3.1-1_amd64.deb
 e5fd8ec20ef1fd4bdcf1258fedd7304980a89538af8909f845013d8abf0ee669 42900 libwfa2-0_2.3.1-1_amd64.deb
 4efc2adf4a8e3684ac17659e1743641cd168c766a05d1678c6a8640cab880dcd 57104 libwfa2-dev_2.3.1-1_amd64.deb
 2da585cbfd04818b14a51fa0c28ed2a50baa4ffc0091ed6675e089b0a34b6c38 7191 libwfa2_2.3.1-1_amd64.buildinfo
Files:
 d471d9134a6a0b0918dbde622d93a1f9 2015 science optional libwfa2_2.3.1-1.dsc
 50025b700c33258ece218c03f33e0d83 4150652 science optional libwfa2_2.3.1.orig.tar.gz
 6d7041da6254a929dea154633b45370d 3348 science optional libwfa2_2.3.1-1.debian.tar.xz
 377195dbb0e26302fbd7f9926408e3d3 123516 debug optional libwfa2-0-dbgsym_2.3.1-1_amd64.deb
 d6c20789f9f7e965670d59daa2947095 42900 libs optional libwfa2-0_2.3.1-1_amd64.deb
 d330c1433d7324ded6699328409d7ac5 57104 libdevel optional libwfa2-dev_2.3.1-1_amd64.deb
 f09453c02d3e79582a29b339b7282c24 7191 science optional libwfa2_2.3.1-1_amd64.buildinfo

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--- End Message ---
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