[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#1029432: ITP: metaeuk -- sensitive, high-throughput gene discovery and annotation for metagenomics



Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <satta@debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : metaeuk
  Version         : 6-a5d39d9
  Upstream Author : Eli Levy Karin <eli.levy.karin@gmail.com> and co-authors
* URL             : https://github.com/soedinglab/metaeuk
* License         : GPL3
  Programming Lang: C++
  Description     : sensitive, high-throughput gene discovery and annotation for metagenomics

MetaEuk is a modular toolkit designed for large-scale gene discovery and
annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and
sensitive homology search capabilities of MMseqs2 with a dynamic programming
procedure to recover optimal exons sets. It reduces redundancies in multiple
discoveries of the same gene and resolves conflicting gene predictions on the
same strand.

This is packaged as a dependency of busco and will be maintained by the
Debian Med team.


Reply to: