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Bug#1023262: marked as done (ITP: any2fasta -- convert various sequence formats to FASTA)

Your message dated Fri, 06 Jan 2023 10:00:10 +0000
with message-id <E1pDjWE-00CRoc-9a@fasolo.debian.org>
and subject line Bug#1023262: fixed in any2fasta 0.4.2-1
has caused the Debian Bug report #1023262,
regarding ITP: any2fasta -- convert various sequence formats to FASTA
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
1023262: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1023262
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: any2fasta -- convert various sequence formats to FASTA
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : any2fasta
  Version         : 0.4.2
  Upstream Author : Torsten Seemann
* URL             : https://github.com/tseemann/any2fasta
* License         : GPL-3+
  Programming Lang: (C, C++, C#, Perl, Python, etc.)
  Description     : convert various sequence formats to FASTA
 Established tools like readseq and seqret from EMBOSS, both create mangled
 IDs containing | or . characters, and there is no way to fix this behaviour.
 This resultes in inconsitences between .gbk and .fna versions of files in
 pipelines.
 .
 This script uses only core Perl modules, has no other dependencies like
 Bioperl or Biopython, and runs very quickly.
 .
 It supports the following input formats:
 .
  1. Genbank flat file, typically .gb, .gbk, .gbff (starts with LOCUS)
  2. EMBL flat file, typically .embl, (starts with ID)
  3. GFF with sequence, typically .gff, .gff3 (starts with ##gff)
  4. FASTA DNA, typically .fasta, .fa, .fna, .ffn (starts with >)
  5. FASTQ DNA, typically .fastq, .fq (starts with @)
  6. CLUSTAL alignments, typically .clw, .clu (starts with CLUSTAL or MUSCLE)
  7. STOCKHOLM alignments, typically .sth (starts with # STOCKHOLM)
  8. GFA assembly graph, typically .gfa (starts with ^[A-Z]\t)
 .
 Files may be compressed with:
 .
  1. gzip, typically .gz
  2. bzip2, typically .bz2
  3. zip, typically .zip

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/any2fasta

--- End Message ---
--- Begin Message --- 
Source: any2fasta
Source-Version: 0.4.2-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
any2fasta, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1023262@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated any2fasta package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Tue, 01 Nov 2022 16:19:16 +0100
Source: any2fasta
Binary: any2fasta any2fasta-examples
Architecture: source all
Version: 0.4.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 any2fasta  - convert various sequence formats to FASTA
 any2fasta-examples - convert various sequence formats to FASTA (example data)
Closes: 1023262
Changes:
 any2fasta (0.4.2-1) unstable; urgency=medium
 .
   * Initial release (Closes: #1023262)
Checksums-Sha1:
 1e9b0e5eb41b2b03feefd8bfd7f73a956098e240 2046 any2fasta_0.4.2-1.dsc
 ac9d2995306c456e178d440642ecfb53cbcaa3cc 6695729 any2fasta_0.4.2.orig.tar.gz
 f908f9710106805d2e60064c9fed0c48d96fc9da 2756 any2fasta_0.4.2-1.debian.tar.xz
 83a0ac099766cbb8a413702c196005b2e7adc5e4 6509484 any2fasta-examples_0.4.2-1_all.deb
 6204770c47f002d40dcd80f5eec2338ae13c0918 6100 any2fasta_0.4.2-1_all.deb
 ce5b825d255077c31f0da15bc9af34083c8eafe4 6113 any2fasta_0.4.2-1_amd64.buildinfo
Checksums-Sha256:
 3c1082110ad82a7fa5425a3f90cfba82c0dbc5d850a1f32851438db67eb2606f 2046 any2fasta_0.4.2-1.dsc
 e4cb2ddccda6298f5b0aee0c10184a75307a08b584d2abbfbf0d59d37b197e73 6695729 any2fasta_0.4.2.orig.tar.gz
 e18e58710d763e5e8195864705cbad30c9af6ec92da450942782601e7a5bfe9d 2756 any2fasta_0.4.2-1.debian.tar.xz
 16d59e7567cedd1425486571bb418cb9323bf0ef158ccd0456f69c67cdfcb545 6509484 any2fasta-examples_0.4.2-1_all.deb
 b73ababfce6dd8c5cdb8d6be33fbaef66f185d9c5c7ea56cdf54742fca305e46 6100 any2fasta_0.4.2-1_all.deb
 9ffa488056196795c9568cafee69e58cb8b9a2dbb9d73bc5ba5f043e199d7606 6113 any2fasta_0.4.2-1_amd64.buildinfo
Files:
 3faa06a1d990ad345fc488aefb876a80 2046 science optional any2fasta_0.4.2-1.dsc
 00e73b677d57448c24890d6d66ef499a 6695729 science optional any2fasta_0.4.2.orig.tar.gz
 b920ed6d8b26ab71760bef72ed4e57ab 2756 science optional any2fasta_0.4.2-1.debian.tar.xz
 73ce21a412fb64590222d063db8b9155 6509484 science optional any2fasta-examples_0.4.2-1_all.deb
 a176c04fa6fba56312d2cb523d81e653 6100 science optional any2fasta_0.4.2-1_all.deb
 29287e944de06a47cf8625bd3e39b492 6113 science optional any2fasta_0.4.2-1_amd64.buildinfo

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--- End Message ---
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