Bug#1022057: marked as done (ITP: seqan-raptor -- pre-filter for querying very large collections of nucleotide sequences)
Your message dated Sun, 30 Oct 2022 19:00:13 +0000
with message-id <E1opDXZ-003GzT-Bt@fasolo.debian.org>
and subject line Bug#1022057: fixed in seqan-raptor 2.0.0.0.git.fecfbca+ds-1
has caused the Debian Bug report #1022057,
regarding ITP: seqan-raptor -- pre-filter for querying very large collections of nucleotide sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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1022057: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022057
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--- Begin Message ---
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: crusoe@debian.org
Subject: ITP: seqan-raptor -- pre-filter for querying very large collections of nucleotide sequences
Package: wnpp
Owner: Michael R. Crusoe <crusoe@debian.org>
Severity: wishlist
* Package name : seqan-raptor
Version : 2.0.0.0.git.fecfbca+ds
Upstream Author : Enrico Seiler
* URL : https://github.com/seqan/raptor
* License : BSD-3-clause
Programming Lang: C
Description : pre-filter for querying very large collections of nucleotide sequences
Raptor is a system for approximately searching many queries such as
next-generation sequencing reads or transcripts in large collections of
nucleotide sequences. Raptor uses winnowing minimizers to define a set of
representative k-mers, an extension of the interleaved Bloom filters (IBFs) as
a set membership data structure and probabilistic thresholding for minimizers.
Our approach allows compression and partitioning of the IBF to enable the
effective use of secondary memory. We test and show the performance and
limitations of the new features using simulated and real datasets. Our data
structure can be used to accelerate various core bioinformatics applications.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/seqan-raptor
--- End Message ---
--- Begin Message ---
Source: seqan-raptor
Source-Version: 2.0.0.0.git.fecfbca+ds-1
Done: Michael R. Crusoe <crusoe@debian.org>
We believe that the bug you reported is fixed in the latest version of
seqan-raptor, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1022057@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <crusoe@debian.org> (supplier of updated seqan-raptor package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 19 Oct 2022 18:58:32 +0200
Source: seqan-raptor
Binary: seqan-raptor seqan-raptor-dbgsym seqan-raptor-doc
Architecture: source amd64 all
Version: 2.0.0.0.git.fecfbca+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
seqan-raptor - pre-filter for querying very large collections of nucleotide sequ
seqan-raptor-doc - HTML & PDF documentation for seqan-raptor and its APIs
Closes: 1022057
Changes:
seqan-raptor (2.0.0.0.git.fecfbca+ds-1) unstable; urgency=medium
.
* Initial release (Closes: #1022057)
Checksums-Sha1:
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Files:
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